STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_1144Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
Sde_1143
N-terminal methylation site.
 
   
 0.962
Sde_1146
PA14.
 
     0.952
Sde_1141
Conserved hypothetical protein.
 
   
 0.902
Sde_1133
Hypothetical protein.
 
  
 0.861
Sde_1135
Type II and III secretion system protein.
 
  
 0.858
Sde_1131
Conserved hypothetical protein.
 
  
 0.856
Sde_1145
Conserved hypothetical protein.
     
 0.808
Sde_1142
Conserved hypothetical protein.
       0.737
Sde_1139
Type II secretion system protein.
 
  
 0.730
Sde_1138
Type II secretion system protein E.
 
 
 0.712
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.