STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aga16BB-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication). (598 aa)    
Predicted Functional Partners:
aga50A
B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication).
 
   
 0.966
aga86C
B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication).
 
   
 0.942
lam16A
Putative retaining b-glycosidase.
  
   
 0.802
alg6A
Putative modular alginate lyase; Three catalytic domains.
  
   
 0.786
aga50B
B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication).
  
     0.774
Sde_2657
Glycosyl hydrolase family 32, N terminal; Belongs to the glycosyl hydrolase 43 family.
  
     0.774
Sde_2652
TonB-dependent receptor, plug.
  
     0.771
cbm6D
Putative polysaccharide-binding protein.
  
     0.771
Sde_2651
ASPIC/UnbV.
  
     0.770
alg18A
Putative alginate lyase.
 
     0.770
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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