STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_1185Hypothetical protein. (295 aa)    
Predicted Functional Partners:
Sde_1186
Protein of unknown function DUF1566.
    
0.911
Sde_1184
Protein of unknown function DUF1552.
 
     0.800
cbm2B
Cellulose-binding protein; Reference: Taylor, et al. 2006. Complete Cellulase System in the Marine Bacterium Saccharophagus degradans Starin 2-40T. Journal of Bacteriology; Belongs to the UPF0312 family.
 
     0.699
Sde_2271
Hypothetical protein.
  
     0.696
Sde_3020
Integrins alpha chain.
  
     0.666
Sde_2640
TonB-dependent receptor.
  
     0.575
Sde_3249
Rhs family protein-like protein.
  
     0.525
pel3A
Putative pectate lyase.
  
     0.477
pes8A
Pectin methylesterase-like protein.
  
     0.473
cbm32D
Putative carbohydrate-binding protein.
  
     0.467
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.