STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_1482FAD dependent oxidoreductase. (398 aa)    
Predicted Functional Partners:
Sde_1480
Carbohydrate kinase, FGGY.
 
 0.997
Sde_1356
Methyl-accepting chemotaxis sensory transducer.
  
  
  0.975
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 0.932
Sde_0255
Diacylglycerol kinase, catalytic region.
  
 0.839
Sde_1481
Glycerophosphoryl diester phosphodiesterase.
 
 
 0.822
Sde_0011
Phospholipid/glycerol acyltransferase.
    
 0.807
Sde_1725
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
    
  0.800
Sde_2125
Glycosyltransferase-like protein.
  
 
 0.740
Sde_3949
Regulatory protein, DeoR.
 
  
 0.671
Sde_2371
FAD linked oxidase-like protein.
 
  
 0.643
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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