STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgl11APutative rhamnogalacturonan lyase. (914 aa)    
Predicted Functional Partners:
ces12A
Transcriptional regulator, GntR family.
   0.974
cbm2A
Cellulose-binding protein; Reference: Taylor, et al. 2006. Complete Cellulase System in the Marine Bacterium Saccharophagus degradans Starin 2-40T. Journal of Bacteriology; Belongs to the UPF0312 family.
 
     0.925
pel3C
Putative pectate lyase.
  
 
 0.806
pel9A
Putative pectate lyase.
 
     0.774
cel5C
Endoglucanase-like protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
    0.753
arb43D
Putative a-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
    0.750
arb43G
Putative bifunctional xylanase/a-L-arabinofuranosidase.
 
  
 0.747
pel1D
Putative pectin/pectate lyase.
  
     0.741
arb43J
b-D-glycosidase/a-L-glycosidase; Belongs to the glycosyl hydrolase 43 family.
  
    0.727
arb43E
Putative arabinanase; Belongs to the glycosyl hydrolase 43 family.
  
    0.723
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.