STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuA-2D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (395 aa)    
Predicted Functional Partners:
Sde_0955
Altronate dehydratase.
 
 
 0.950
Sde_0941
Mannitol dehydrogenase-like protein.
 
 0.945
Sde_1283
Short-chain dehydrogenase/reductase SDR.
 
 
 0.930
Sde_1064
Mandelate racemase/muconate lactonizing enzyme.
    
 0.908
Sde_2646
Short-chain dehydrogenase/reductase SDR.
  
 
 0.908
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
  
  
 
0.903
Sde_0939
2-keto-3-deoxygluconate kinase.
 
  
 0.848
Sde_3280
2-keto-3-deoxygluconate kinase.
 
  
 0.838
Sde_2656
2-keto-3-deoxygluconate kinase.
 
  
 0.836
Sde_1269
2-keto-3-deoxygluconate kinase.
 
  
 0.835
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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