Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sde_1928 | Sde_1932 | Transcriptional regulator, MerR family. | Amino acid permease-associated region. | 0.534 |
Sde_1928 | Sde_1933 | Transcriptional regulator, MerR family. | Ion transport 2. | 0.478 |
Sde_1928 | Sde_1935 | Transcriptional regulator, MerR family. | Heavy metal translocating P-type ATPase. | 0.460 |
Sde_1928 | Sde_1937 | Transcriptional regulator, MerR family. | Conserved hypothetical protein. | 0.425 |
Sde_1932 | Sde_1928 | Amino acid permease-associated region. | Transcriptional regulator, MerR family. | 0.534 |
Sde_1932 | Sde_1933 | Amino acid permease-associated region. | Ion transport 2. | 0.806 |
Sde_1932 | Sde_1935 | Amino acid permease-associated region. | Heavy metal translocating P-type ATPase. | 0.668 |
Sde_1932 | Sde_1937 | Amino acid permease-associated region. | Conserved hypothetical protein. | 0.592 |
Sde_1932 | Sde_1942 | Amino acid permease-associated region. | Protein of unknown function DUF305. | 0.609 |
Sde_1933 | Sde_1928 | Ion transport 2. | Transcriptional regulator, MerR family. | 0.478 |
Sde_1933 | Sde_1932 | Ion transport 2. | Amino acid permease-associated region. | 0.806 |
Sde_1933 | Sde_1934 | Ion transport 2. | Regulatory protein, MerR. | 0.405 |
Sde_1933 | Sde_1935 | Ion transport 2. | Heavy metal translocating P-type ATPase. | 0.503 |
Sde_1933 | Sde_1937 | Ion transport 2. | Conserved hypothetical protein. | 0.482 |
Sde_1933 | Sde_1942 | Ion transport 2. | Protein of unknown function DUF305. | 0.484 |
Sde_1934 | Sde_1933 | Regulatory protein, MerR. | Ion transport 2. | 0.405 |
Sde_1934 | Sde_1935 | Regulatory protein, MerR. | Heavy metal translocating P-type ATPase. | 0.794 |
Sde_1934 | Sde_1937 | Regulatory protein, MerR. | Conserved hypothetical protein. | 0.711 |
Sde_1935 | Sde_1928 | Heavy metal translocating P-type ATPase. | Transcriptional regulator, MerR family. | 0.460 |
Sde_1935 | Sde_1932 | Heavy metal translocating P-type ATPase. | Amino acid permease-associated region. | 0.668 |
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