Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Sde_1972ABC transporter related. (247 aa)    
Predicted Functional Partners:
Sde_1971
Protein of unknown function DUF214.
 
   0.969
Sde_2282
Protein of unknown function DUF214.
 
 
 0.935
Sde_2281
Protein of unknown function DUF214.
 
 
 0.932
Sde_1973
Conserved hypothetical protein.
 
  
 0.834
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.824
Sde_1976
ABC-type metal ion transport system, periplasmic component/surface adhesin.
 
  
 0.813
Sde_1809
Lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 
 0.790
Sde_1811
Lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 
 0.790
lolB
Transcriptional regulator, GntR family; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.600
Sde_2264
Histidine kinase.
 
      0.521
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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