Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Sde_1985Ferritin and Dps; Belongs to the Dps family. (168 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.766
Sde_0733
Putative serine protein kinase, PrkA.
   
    0.567
Sde_0899
Flavodoxin/nitric oxide synthase; Belongs to the WrbA family.
  
  
 0.492
Sde_3518
NADPH-dependent FMN reductase.
  
  
 0.492
Sde_1429
Multimeric flavodoxin WrbA.
  
  
 0.467
Sde_0532
SSU ribosomal protein S30P / sigma 54 modulation protein.
   
    0.466
Sde_1599
Putative sigma 54 modulation protein/ribosomal protein S30EA.
   
    0.466
Sde_1311
Transcriptional regulator BolA; Belongs to the BolA/IbaG family.
   
  
 0.464
Sde_1986
Conserved hypothetical protein.
  
    0.444
Sde_2430
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
  
 0.418
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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