STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2054Response regulator receiver. (198 aa)    
Predicted Functional Partners:
Sde_2240
ATP-binding region, ATPase-like protein.
 0.994
Sde_2911
ATP-binding region, ATPase-like protein.
 
  0.946
Sde_3120
ATP-binding region, ATPase-like protein.
 
 
 0.934
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
    
 0.889
Sde_3119
ATP-binding region, ATPase-like protein.
 
 0.873
Sde_2488
ATP-binding region, ATPase-like protein.
 
 
 0.871
Sde_1923
Response regulator receiver.
 
 
 0.870
Sde_3821
Histidine kinase, dimerisation and phosphoacceptor region.
 
 
 0.833
Sde_0264
ATP-binding region, ATPase-like protein.
 
 
 0.755
Sde_1409
ATP-binding region, ATPase-like protein.
 
 
 0.610
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.