Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sde_0081 | Sde_0519 | Chemotaxis sensory transducer. | Response regulator receiver. | 0.951 |
Sde_0081 | Sde_2155 | Chemotaxis sensory transducer. | CheW-like protein. | 0.970 |
Sde_0081 | Sde_2156 | Chemotaxis sensory transducer. | CheW-like protein. | 0.887 |
Sde_0081 | Sde_2161 | Chemotaxis sensory transducer. | ATP-binding region, ATPase-like protein. | 0.972 |
Sde_0081 | Sde_3107 | Chemotaxis sensory transducer. | ATP-binding region, ATPase-like protein. | 0.972 |
Sde_0391 | Sde_0519 | Methyl-accepting chemotaxis sensory transducer. | Response regulator receiver. | 0.950 |
Sde_0391 | Sde_2155 | Methyl-accepting chemotaxis sensory transducer. | CheW-like protein. | 0.970 |
Sde_0391 | Sde_2156 | Methyl-accepting chemotaxis sensory transducer. | CheW-like protein. | 0.886 |
Sde_0391 | Sde_2161 | Methyl-accepting chemotaxis sensory transducer. | ATP-binding region, ATPase-like protein. | 0.972 |
Sde_0391 | Sde_3107 | Methyl-accepting chemotaxis sensory transducer. | ATP-binding region, ATPase-like protein. | 0.972 |
Sde_0519 | Sde_0081 | Response regulator receiver. | Chemotaxis sensory transducer. | 0.951 |
Sde_0519 | Sde_0391 | Response regulator receiver. | Methyl-accepting chemotaxis sensory transducer. | 0.950 |
Sde_0519 | Sde_1108 | Response regulator receiver. | Chemotaxis sensory transducer. | 0.951 |
Sde_0519 | Sde_2155 | Response regulator receiver. | CheW-like protein. | 0.980 |
Sde_0519 | Sde_2156 | Response regulator receiver. | CheW-like protein. | 0.941 |
Sde_0519 | Sde_2161 | Response regulator receiver. | ATP-binding region, ATPase-like protein. | 0.623 |
Sde_0519 | Sde_2316 | Response regulator receiver. | Chemotaxis sensory transducer. | 0.949 |
Sde_0519 | Sde_3105 | Response regulator receiver. | PAS domain protein. | 0.974 |
Sde_0519 | Sde_3107 | Response regulator receiver. | ATP-binding region, ATPase-like protein. | 0.626 |
Sde_0519 | Sde_3111 | Response regulator receiver. | Chemotaxis sensory transducer. | 0.951 |
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