Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sde_0795 | Sde_1184 | Sde_0795 | Sde_1184 | TonB-dependent receptor, plug. | Protein of unknown function DUF1552. | 0.615 |
Sde_0795 | Sde_2271 | Sde_0795 | Sde_2271 | TonB-dependent receptor, plug. | Hypothetical protein. | 0.604 |
Sde_0795 | Sde_2640 | Sde_0795 | Sde_2640 | TonB-dependent receptor, plug. | TonB-dependent receptor. | 0.765 |
Sde_0795 | Sde_2799 | Sde_0795 | Sde_2799 | TonB-dependent receptor, plug. | PepSY-associated TM helix. | 0.540 |
Sde_0795 | Sde_3020 | Sde_0795 | Sde_3020 | TonB-dependent receptor, plug. | Integrins alpha chain. | 0.713 |
Sde_0795 | Sde_3249 | Sde_0795 | Sde_3249 | TonB-dependent receptor, plug. | Rhs family protein-like protein. | 0.495 |
Sde_0795 | cbm2B | Sde_0795 | Sde_1183 | TonB-dependent receptor, plug. | Cellulose-binding protein; Reference: Taylor, et al. 2006. Complete Cellulase System in the Marine Bacterium Saccharophagus degradans Starin 2-40T. Journal of Bacteriology; Belongs to the UPF0312 family. | 0.422 |
Sde_1184 | Sde_0795 | Sde_1184 | Sde_0795 | Protein of unknown function DUF1552. | TonB-dependent receptor, plug. | 0.615 |
Sde_1184 | Sde_1185 | Sde_1184 | Sde_1185 | Protein of unknown function DUF1552. | Hypothetical protein. | 0.800 |
Sde_1184 | Sde_2271 | Sde_1184 | Sde_2271 | Protein of unknown function DUF1552. | Hypothetical protein. | 0.755 |
Sde_1184 | Sde_2640 | Sde_1184 | Sde_2640 | Protein of unknown function DUF1552. | TonB-dependent receptor. | 0.425 |
Sde_1184 | Sde_2799 | Sde_1184 | Sde_2799 | Protein of unknown function DUF1552. | PepSY-associated TM helix. | 0.437 |
Sde_1184 | Sde_3020 | Sde_1184 | Sde_3020 | Protein of unknown function DUF1552. | Integrins alpha chain. | 0.756 |
Sde_1184 | Sde_3249 | Sde_1184 | Sde_3249 | Protein of unknown function DUF1552. | Rhs family protein-like protein. | 0.727 |
Sde_1184 | cbm2B | Sde_1184 | Sde_1183 | Protein of unknown function DUF1552. | Cellulose-binding protein; Reference: Taylor, et al. 2006. Complete Cellulase System in the Marine Bacterium Saccharophagus degradans Starin 2-40T. Journal of Bacteriology; Belongs to the UPF0312 family. | 0.899 |
Sde_1184 | plyA | Sde_1184 | Sde_3881 | Protein of unknown function DUF1552. | Polysaccharide lyase-like protein. | 0.769 |
Sde_1185 | Sde_1184 | Sde_1185 | Sde_1184 | Hypothetical protein. | Protein of unknown function DUF1552. | 0.800 |
Sde_1185 | Sde_2271 | Sde_1185 | Sde_2271 | Hypothetical protein. | Hypothetical protein. | 0.696 |
Sde_1185 | Sde_2640 | Sde_1185 | Sde_2640 | Hypothetical protein. | TonB-dependent receptor. | 0.575 |
Sde_1185 | Sde_2799 | Sde_1185 | Sde_2799 | Hypothetical protein. | PepSY-associated TM helix. | 0.413 |
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