Sde_2296 protein (Saccharophagus degradans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Sde_2296

Response regulator receiver. (222 aa)

Predicted Functional Partners:

Sde_2297

0.960

Sde_3120

0.924

Sde_2444

0.835

Sde_1409

0.828

Sde_1570

0.826

Sde_1949

0.820

Sde_3839

0.808

Sde_0551

0.786

Sde_0291

0.782

Sde_3439

0.780

Your Current Organism:

Saccharophagus degradans

NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
Sde_0291	Sde_1409	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.447
Sde_0291	Sde_2296	ATP-binding region, ATPase-like protein.	Response regulator receiver.	0.782
Sde_0291	Sde_3120	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.841
Sde_0551	Sde_1409	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.469
Sde_0551	Sde_2296	ATP-binding region, ATPase-like protein.	Response regulator receiver.	0.786
Sde_0551	Sde_3120	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.848
Sde_1409	Sde_0291	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.447
Sde_1409	Sde_0551	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.469
Sde_1409	Sde_1570	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.985
Sde_1409	Sde_1949	ATP-binding region, ATPase-like protein.	Heavy metal sensor kinase; Member of a two-component regulatory system.	0.424
Sde_1409	Sde_2296	ATP-binding region, ATPase-like protein.	Response regulator receiver.	0.828
Sde_1409	Sde_2444	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.435
Sde_1409	Sde_3120	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.986
Sde_1409	Sde_3839	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.647
Sde_1570	Sde_1409	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.985
Sde_1570	Sde_2296	ATP-binding region, ATPase-like protein.	Response regulator receiver.	0.826
Sde_1570	Sde_3120	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.988
Sde_1570	Sde_3839	ATP-binding region, ATPase-like protein.	ATP-binding region, ATPase-like protein.	0.515
Sde_1949	Sde_1409	Heavy metal sensor kinase; Member of a two-component regulatory system.	ATP-binding region, ATPase-like protein.	0.424
Sde_1949	Sde_2296	Heavy metal sensor kinase; Member of a two-component regulatory system.	Response regulator receiver.	0.820