STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2451Thioesterase. (261 aa)    
Predicted Functional Partners:
Sde_3725
Amino acid adenylation.
  
 0.996
Sde_2453
AMP-dependent synthetase and ligase.
 
  
 0.911
Sde_3396
Thioester reductase.
 
  
 0.846
Sde_3398
Isochorismatase.
 
  
 0.780
Sde_3397
Condensation domain.
 
  
 0.763
Sde_0688
Beta-ketoacyl synthase.
 
  
 0.751
Sde_3399
AMP-dependent synthetase and ligase.
 
  
 0.718
Sde_2455
Histidine kinase.
  
  
 0.680
Sde_2452
Major facilitator superfamily MFS_1.
       0.642
Sde_2454
Monooxygenase, FAD-binding.
       0.633
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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