STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2467Protein of unknown function DUF1365. (276 aa)    
Predicted Functional Partners:
Sde_2466
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.995
Sde_2468
Amine oxidase.
 
  
 0.967
Sde_2470
Protein of unknown function DUF1486.
 
   
 0.951
Sde_2469
Short-chain dehydrogenase/reductase SDR.
 
  
 0.945
Sde_2838
Lipoprotein, putative.
 
  
 0.884
Sde_2472
Anti-sigma factor ChrR, putative.
 
  
 0.866
Sde_2465
Conserved hypothetical protein.
 
     0.783
Sde_2471
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.771
Sde_0729
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
 
  
 0.580
Sde_2464
Hypothetical protein.
       0.536
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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