STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAD-xylose isomerase; Belongs to the xylose isomerase family. (443 aa)    
Predicted Functional Partners:
Sde_2505
Carbohydrate kinase, FGGY.
 
 
 0.993
Sde_2639
Fructokinase.
    
 0.917
Sde_3962
Fructokinase.
    
 0.917
Sde_0761
Short-chain dehydrogenase/reductase SDR.
     
 0.901
Sde_0771
Transcriptional regulator, GntR family.
     
 0.901
Sde_0772
L-ribulokinase; Belongs to the ribulokinase family.
      
 0.817
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
 0.817
pgi
Glucose-6-phosphate isomerase.
      
 0.815
glk
Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.810
gly2E
Putative retaining b-glycosidase; Belongs to the glycosyl hydrolase 2 family.
    
 0.803
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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