STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2511Cyclic nucleotide-binding. (230 aa)    
Predicted Functional Partners:
Sde_1173
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
 
 0.791
cel5I
Putative retaining b-glycosidase.
  
     0.744
Sde_0887
Hypothetical protein.
  
     0.709
Sde_1996
Hypothetical protein.
  
 
   0.687
Sde_0098
Conserved hypothetical protein.
  
     0.658
Sde_0917
Sporulation related.
  
     0.652
Sde_2019
Conserved hypothetical protein.
  
     0.650
Sde_2230
Cyclic nucleotide-binding.
 
    0.629
Sde_2542
TonB-dependent receptor, plug.
  
     0.627
Sde_2512
TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.625
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.