STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyn10CPutative xylanase. (374 aa)    
Predicted Functional Partners:
gly43L
b-D-glycosidase/a-L-glycosidase-like protein; Belongs to the glycosyl hydrolase 43 family.
   
 0.932
arb43J
b-D-glycosidase/a-L-glycosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.915
Sde_1755
Hypothetical protein.
     0.876
cel6A
Putative cellobiohydrolase, non-reducing end; Belongs to the glycosyl hydrolase family 6.
 
   
 0.856
arb43K
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.852
arb43I
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.845
agu67A
Putative a-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.808
arb43H
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.786
arg53B
Endo-1,4-b-galactanase-like protein.
 
     0.762
cel9A
Putative endoglucanase.
 
     0.697
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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