STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2820Uncharacterized iron-regulated membrane protein-like protein. (417 aa)    
Predicted Functional Partners:
Sde_2819
Tetratricopeptide TPR_2.
       0.773
Sde_2818
Hypothetical protein.
  
    0.752
Sde_2815
MotA/TolQ/ExbB proton channel.
  
    0.732
Sde_2816
MotA/TolQ/ExbB proton channel.
  
    0.732
Sde_2814
Hypothetical protein.
       0.726
Sde_2817
Biopolymer transport protein ExbD/TolR.
       0.726
Sde_2813
TonB-dependent siderophore receptor.
 
  
 0.603
Sde_2812
2OG-Fe(II) oxygenase.
 
     0.482
Sde_0673
Hypothetical protein.
  
     0.432
Sde_3830
Hypothetical protein.
  
     0.400
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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