STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2829Transcription factor jumonji/aspartyl beta-hydroxylase. (356 aa)    
Predicted Functional Partners:
Sde_2828
Tryptophan halogenase.
 
     0.920
Sde_2830
SapC.
 
     0.915
Sde_2831
TonB-dependent receptor, plug.
 
     0.854
Sde_1101
TonB-dependent receptor.
  
     0.770
Sde_1397
TonB-dependent receptor, plug.
  
     0.768
Sde_1263
TonB-dependent receptor.
  
     0.766
Sde_1264
TonB-dependent receptor, plug.
  
     0.764
Sde_1399
SapC.
 
     0.764
Sde_1104
Tryptophan halogenase.
 
     0.760
Sde_1261
SapC.
 
     0.759
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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