STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2888Transcriptional regulator, AraC family. (286 aa)    
Predicted Functional Partners:
ces1A
Esterase-like protein.
 
     0.808
Sde_2652
TonB-dependent receptor, plug.
  
     0.753
aga50B
B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication).
 
     0.737
Sde_2653
Hypothetical protein.
  
     0.736
Sde_2651
ASPIC/UnbV.
  
     0.726
Sde_3601
Helix-turn-helix, AraC type.
  
     0.722
aga50A
B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication).
 
     0.714
aga86C
B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication).
  
     0.705
Sde_2654
Hypothetical protein.
  
     0.672
Sde_2889
Histidine kinase.
 
     0.666
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.