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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel5AEndoglucanase; Reference: Taylor, et al. 2006. Complete Cellulase System in the Marine Bacterium Saccharophagus degradans Starin 2-40T. Journal of Bacteriology. (1167 aa)    
Predicted Functional Partners:
cel6A
Putative cellobiohydrolase, non-reducing end; Belongs to the glycosyl hydrolase family 6.
 
 
 0.974
cep94A
Cellobiose phosphorylase.
  
  
 0.924
chi18B
Chitinase. Glycosyl Hydrolase family 18; Reference: Howard, et al. 2003. Genomic analysis and initial characterization of the chitinolytic system of Microbulbifer degradans strain 2-40. J Bacteriology 185(3352-3360).
  
   
 0.833
ced3A
Exo-1,4-beta-glucosidase.
 
  
 0.775
cel9A
Putative endoglucanase.
  
  
 0.774
ced3B
Exo-1,4-beta-glucosidase.
 
  
  0.768
Sde_2112
Periplasmic protein.
      
 0.749
cel5B
Endoglucanase-like protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.745
man5N
Putative mannan endo-1,4-b-mannosidase.
  
    0.744
man5O
Putative mannan endo-1,4-b-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.743
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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