Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sde_3232GGDEF domain. (498 aa)    
Predicted Functional Partners:
Sde_3923
EAL domain protein.
    0.969
Sde_3120
ATP-binding region, ATPase-like protein.
 
 
 0.853
Sde_3233
PA14.
 
     0.816
Sde_3311
EAL domain protein.
 
  
 0.785
Sde_0524
MHYT.
 
      0.762
Sde_3313
Diguanylate cyclase/phosphodiesterase.
 
  
 0.742
Sde_0816
Diguanylate cyclase/phosphodiesterase.
 
  
 0.719
Sde_3810
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
 
  
 0.712
Sde_1361
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 0.693
Sde_2977
Response regulator receiver.
 
 
  
 0.685
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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