Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sde_0778 | Sde_2288 | Sde_0778 | Sde_2288 | Protein of unknown function DUF1680. | TonB-dependent receptor. | 0.596 |
Sde_0778 | Sde_3318 | Sde_0778 | Sde_3318 | Protein of unknown function DUF1680. | TonB-dependent receptor. | 0.579 |
Sde_0778 | arb43B | Sde_0778 | Sde_0787 | Protein of unknown function DUF1680. | Putative a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. | 0.717 |
Sde_0778 | arb43C | Sde_0778 | Sde_0777 | Protein of unknown function DUF1680. | Putative a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. | 0.830 |
Sde_0778 | arb43J | Sde_0778 | Sde_0789 | Protein of unknown function DUF1680. | b-D-glycosidase/a-L-glycosidase; Belongs to the glycosyl hydrolase 43 family. | 0.849 |
Sde_0778 | arb51A | Sde_0778 | Sde_1767 | Protein of unknown function DUF1680. | Putative a-L-arabinofuranosidase. | 0.775 |
Sde_0778 | gly43F | Sde_0778 | Sde_0791 | Protein of unknown function DUF1680. | b-D-glycosidase/a-L-glycosidase-like protein. | 0.762 |
Sde_0778 | gly43M | Sde_0778 | Sde_3317 | Protein of unknown function DUF1680. | b-D-glycosidase/a-L-glycosidase-like protein. | 0.751 |
Sde_2288 | Sde_0778 | Sde_2288 | Sde_0778 | TonB-dependent receptor. | Protein of unknown function DUF1680. | 0.596 |
Sde_2288 | Sde_2801 | Sde_2288 | Sde_2801 | TonB-dependent receptor. | VCBS domain protein. | 0.506 |
Sde_2288 | arb43J | Sde_2288 | Sde_0789 | TonB-dependent receptor. | b-D-glycosidase/a-L-glycosidase; Belongs to the glycosyl hydrolase 43 family. | 0.456 |
Sde_2288 | gly43F | Sde_2288 | Sde_0791 | TonB-dependent receptor. | b-D-glycosidase/a-L-glycosidase-like protein. | 0.657 |
Sde_2288 | gly43M | Sde_2288 | Sde_3317 | TonB-dependent receptor. | b-D-glycosidase/a-L-glycosidase-like protein. | 0.754 |
Sde_2288 | pes8A | Sde_2288 | Sde_3447 | TonB-dependent receptor. | Pectin methylesterase-like protein. | 0.419 |
Sde_2801 | Sde_2288 | Sde_2801 | Sde_2288 | VCBS domain protein. | TonB-dependent receptor. | 0.506 |
Sde_2801 | Sde_3318 | Sde_2801 | Sde_3318 | VCBS domain protein. | TonB-dependent receptor. | 0.589 |
Sde_2801 | gly43F | Sde_2801 | Sde_0791 | VCBS domain protein. | b-D-glycosidase/a-L-glycosidase-like protein. | 0.483 |
Sde_2801 | gly43M | Sde_2801 | Sde_3317 | VCBS domain protein. | b-D-glycosidase/a-L-glycosidase-like protein. | 0.722 |
Sde_2801 | pes8A | Sde_2801 | Sde_3447 | VCBS domain protein. | Pectin methylesterase-like protein. | 0.748 |
Sde_3318 | Sde_0778 | Sde_3318 | Sde_0778 | TonB-dependent receptor. | Protein of unknown function DUF1680. | 0.579 |
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