STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_3325Peptidase S8 and S53, subtilisin, kexin, sedolisin. (420 aa)    
Predicted Functional Partners:
Sde_3324
Hypothetical protein.
 
    0.863
Sde_3323
RTX toxins and related Ca2+-binding protein.
 
   0.803
Sde_0299
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.632
Sde_1421
Hypothetical protein.
   
 
 0.584
Sde_3326
Phage Tail Collar.
       0.501
Sde_3327
Phage Tail Collar.
       0.495
chi18C
Chitinase. Glycosyl Hydrolase family 18; Reference: Howard, et al. 2003. Genomic analysis and initial characterization of the chitinolytic system of Microbulbifer degradans strain 2-40. J Bacteriology 185(3352-3360).
 
 
 0.495
Sde_3328
Phage Tail Collar.
       0.486
Sde_3725
Amino acid adenylation.
  
  
 0.484
Sde_3329
Hypothetical protein.
       0.443
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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