STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_3369TfoX-like protein. (92 aa)    
Predicted Functional Partners:
Sde_3627
CheW-like protein.
  
     0.715
Sde_0820
Protein of unknown function DUF1631.
 
     0.680
Sde_2100
Conserved hypothetical protein.
  
     0.662
Sde_2019
Conserved hypothetical protein.
  
     0.653
Sde_1056
Abortive infection protein.
  
     0.642
Sde_2588
Outer membrane chaperone Skp (OmpH).
  
     0.631
Sde_0875
Protein of unknown function DUF1631.
 
     0.588
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
     0.578
Sde_3187
Conserved hypothetical protein.
  
     0.577
cbm6F
peptidyl-Asp metallopeptidase. Metallo peptidase. MEROPS family M72.
  
     0.570
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.