STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_3591OmpA/MotB. (380 aa)    
Predicted Functional Partners:
Sde_1293
Type I secretion outer membrane protein, TolC.
 
 
 0.724
Sde_2570
OmpA/MotB.
  
     0.706
Sde_0586
OmpA/MotB.
  
  
 
0.591
tolB
TolB-like protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.589
Sde_2427
OmpA/MotB.
  
     0.568
Sde_0798
Conserved hypothetical protein.
    
  0.555
Sde_3323
RTX toxins and related Ca2+-binding protein.
 
  
  0.555
Sde_0119
OmpA-like transmembrane region; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
     
  0.540
Sde_1523
OmpA/MotB.
 
 
 0.489
Sde_3590
Conserved hypothetical protein.
       0.465
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.