STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_3702Conserved hypothetical protein. (244 aa)    
Predicted Functional Partners:
Sde_3704
ATP-binding region, ATPase-like protein.
 
 
   0.864
Sde_3701
Conserved hypothetical protein.
 
    
0.838
Sde_3030
TonB-dependent receptor.
  
 
   0.621
Sde_3703
Two component transcriptional regulator, winged helix family.
 
     0.588
pes8A
Pectin methylesterase-like protein.
  
     0.573
Sde_2801
VCBS domain protein.
  
   0.571
Sde_0889
TonB-dependent receptor, plug.
  
 
   0.496
Sde_3504
Conserved hypothetical protein.
  
     0.484
Sde_3700
2OG-Fe(II) oxygenase.
       0.465
Sde_0294
Conserved hypothetical protein.
  
     0.447
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.