STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arg53BEndo-1,4-b-galactanase-like protein. (476 aa)    
Predicted Functional Partners:
xyn10C
Putative xylanase.
 
     0.762
xyn10B
Putative xylanase.
     0.752
cel5B
Endoglucanase-like protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
    0.746
cel5E
Putative retaining b-glycosidase.
 
    0.724
cel5D
Endoglucanase-like protein.
    0.707
arb43G
Putative bifunctional xylanase/a-L-arabinofuranosidase.
 
   
 0.684
cel6A
Putative cellobiohydrolase, non-reducing end; Belongs to the glycosyl hydrolase family 6.
  
     0.670
cbm6B
Putative polysaccharide-binding protein.
 
    0.660
cel9B
Cellulose 1,4-beta-cellobiosidase.
  
     0.640
xyn11B
Putative bifunctional xylanase/acetylxylan esterase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.637
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.