STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_3945Hypothetical protein. (352 aa)    
Predicted Functional Partners:
Sde_3944
Protein kinase.
 
     0.811
Sde_1241
Conserved hypothetical protein.
 
     0.747
Sde_1242
Globin.
 
     0.723
Sde_1260
Peptidylglycine monooxygenase-like protein.
   
   0.692
Sde_1947
Copper-resistance protein CopA.
 
 
 
 0.516
Sde_0315
Multicopper oxidase, type 3.
 
 
 
 0.509
Sde_0309
Secretion protein HlyD.
  
     0.505
Sde_0305
ATP-binding region, ATPase-like protein.
 
     0.482
Sde_0307
Protein of unknown function DUF214.
 
    0.437
Sde_3946
Unsaturated uronyl hydrolase-like protein.
       0.411
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.