STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_4006TonB-dependent receptor, plug. (984 aa)    
Predicted Functional Partners:
Sde_1493
TonB-dependent receptor, plug.
  
     0.695
Sde_0204
Protein of unknown function DUF955.
  
     0.683
Sde_2829
Transcription factor jumonji/aspartyl beta-hydroxylase.
  
     0.680
gly5R
Putative retaining b-glycosidase.
 
     0.678
Sde_1494
Serine/threonine protein kinase.
 
     0.676
man5Q
Putative retaining b-glycosidase.
  
     0.657
Sde_4005
Tryptophan halogenase.
 
     0.656
Sde_1400
Transcription factor jumonji/aspartyl beta-hydroxylase.
  
     0.652
gly5S
Putative retaining b-glycosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.647
Sde_0505
Mannose-6-phosphate isomerase.
  
     0.637
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.