Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OEOE_0110 | OEOE_0111 | OEOE_0110 | OEOE_0111 | Hypothetical protein. | Predicted permease. | 0.546 |
OEOE_0110 | OEOE_0113 | OEOE_0110 | OEOE_0113 | Hypothetical protein. | Chromosome segregation ATPase. | 0.546 |
OEOE_0110 | OEOE_0114 | OEOE_0110 | OEOE_0114 | Hypothetical protein. | Hypothetical protein. | 0.546 |
OEOE_0110 | OEOE_0115 | OEOE_0110 | OEOE_0115 | Hypothetical protein. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.546 |
OEOE_0110 | OEOE_0116 | OEOE_0110 | OEOE_0116 | Hypothetical protein. | Hypothetical protein. | 0.546 |
OEOE_0110 | rsmG | OEOE_0110 | OEOE_0112 | Hypothetical protein. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.546 |
OEOE_0110 | ychF | OEOE_0110 | OEOE_0117 | Hypothetical protein. | Predicted GTPase, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.424 |
OEOE_0111 | OEOE_0110 | OEOE_0111 | OEOE_0110 | Predicted permease. | Hypothetical protein. | 0.546 |
OEOE_0111 | OEOE_0113 | OEOE_0111 | OEOE_0113 | Predicted permease. | Chromosome segregation ATPase. | 0.775 |
OEOE_0111 | OEOE_0114 | OEOE_0111 | OEOE_0114 | Predicted permease. | Hypothetical protein. | 0.773 |
OEOE_0111 | OEOE_0115 | OEOE_0111 | OEOE_0115 | Predicted permease. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.777 |
OEOE_0111 | OEOE_0116 | OEOE_0111 | OEOE_0116 | Predicted permease. | Hypothetical protein. | 0.786 |
OEOE_0111 | rsmG | OEOE_0111 | OEOE_0112 | Predicted permease. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.773 |
OEOE_0111 | ychF | OEOE_0111 | OEOE_0117 | Predicted permease. | Predicted GTPase, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.610 |
OEOE_0113 | OEOE_0110 | OEOE_0113 | OEOE_0110 | Chromosome segregation ATPase. | Hypothetical protein. | 0.546 |
OEOE_0113 | OEOE_0111 | OEOE_0113 | OEOE_0111 | Chromosome segregation ATPase. | Predicted permease. | 0.775 |
OEOE_0113 | OEOE_0114 | OEOE_0113 | OEOE_0114 | Chromosome segregation ATPase. | Hypothetical protein. | 0.773 |
OEOE_0113 | OEOE_0115 | OEOE_0113 | OEOE_0115 | Chromosome segregation ATPase. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.998 |
OEOE_0113 | OEOE_0116 | OEOE_0113 | OEOE_0116 | Chromosome segregation ATPase. | Hypothetical protein. | 0.806 |
OEOE_0113 | rsmG | OEOE_0113 | OEOE_0112 | Chromosome segregation ATPase. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.877 |
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