STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0146PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_4699 glycosyl transferase, group 1. (402 aa)    
Predicted Functional Partners:
Tery_0145
KEGG: ava:Ava_1930 hypothetical protein.
       0.783
Tery_1135
PFAM: glycosyl transferase, group 1; KEGG: ana:alr3425 probable glycosyl transferase.
  
     0.732
Tery_2693
TIGRFAM: eight transmembrane protein EpsH; KEGG: ana:all0497 unknown protein.
  
   
 0.727
Tery_4794
KEGG: ava:Ava_0442 hypothetical protein.
  
     0.726
Tery_1097
PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_1366 glycosyl transferase, family 2.
  
    0.705
Tery_5007
Hypothetical protein; KEGG: ava:Ava_3528 peptidoglycan-binding domain 1.
  
     0.704
Tery_2688
PFAM: lipopolysaccharide biosynthesis; KEGG: ava:Ava_2908 lipopolysaccharide biosynthesis.
 
  
 0.677
Tery_3433
PFAM: glycosyl transferase, family 2; KEGG: ana:alr3176 probable glycosyl transferase.
 
     0.674
Tery_1099
PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_1365 glycosyl transferase, group 1.
  
     0.663
Tery_4588
PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_0300 glycosyl transferase, family 2.
  
     0.647
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.