Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tery_0200Transposase; KEGG: ana:alr4628 transposase. (345 aa)    
Predicted Functional Partners:
Tery_1134
KEGG: ava:Ava_3446 hypothetical protein.
   
 0.557
Tery_2699
KEGG: ava:Ava_3145 putative ATP-dependent DNA helicase DinG.
   
 0.550
Tery_4496
Hypothetical protein; KEGG: cac:CAC1687 collagenase family protease.
  
     0.495
Tery_2122
PFAM: protein of unknown function DUF790; KEGG: ana:all2950 hypothetical protein.
   
   0.409
Tery_0546
DNA polymerase I; KEGG: ava:Ava_0581 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease 3'-5' exonuclease; SMART: Helix-hairpin-helix motif, class 2.
  
 0.401
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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