STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0201PFAM: aminotransferase, class V; KEGG: dsy:DSY0801 hypothetical protein. (485 aa)    
Predicted Functional Partners:
Tery_4135
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.954
Tery_4356
KEGG: ava:Ava_0425 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: ATPase.
  
 0.917
Tery_4357
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD; KEGG: ana:alr2494 hypothetical protein.
 
 0.894
Tery_4355
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD; KEGG: syn:slr0074 ABC transporter subunit.
 
 0.892
Tery_4443
PFAM: Fe-S metabolism associated SufE; KEGG: ava:Ava_3224 Fe-S metabolism associated SufE.
 
 
 0.849
Tery_0185
PFAM: aminotransferase, class V; KEGG: ana:alr3210 L-cysteine/cystine lyase.
  
     0.729
Tery_2968
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase Thioesterase condensation domain phosphopantetheine-binding; KEGG: ava:Ava_3855 amino acid adenylation.
   
  
 0.459
Tery_3819
PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like Methyltransferase type 11 Methyltransferase type 12; KEGG: ana:alr2680 polyketide synthase.
  
  
 0.450
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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