STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0220PFAM: Radical SAM; KEGG: ava:Ava_1219 radical SAM. (340 aa)    
Predicted Functional Partners:
Tery_0727
TIGRFAM: squalene/oxidosqualene cyclases squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: ana:all0775 squalene-hopene-cyclase.
   
 0.932
Tery_3280
PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD NmrA-like Male sterility-like; KEGG: ava:Ava_1218 3-beta hydroxysteroid dehydrogenase/isomerase.
 
   
 0.785
Tery_1372
PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_4672 glycosyl transferase, family 2.
  
   
 0.775
Tery_4964
PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: gox:GOX0614 putative methyltransferase.
 
  
 0.653
Tery_1662
KEGG: ava:Ava_1216 hypothetical protein.
 
   
 0.650
Tery_4954
PFAM: glycosyl transferase, family 2; KEGG: syn:slr0813 ceramide glucosyltransferase.
 
   
 0.589
Tery_4135
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.427
Tery_3325
uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Uroporphyrinogen III synthase HEM4; KEGG: ana:alr3450 uroporphyrinogen III methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.403
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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