STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0288PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: syf:Synpcc7942_1408 membrane-associated protein. (249 aa)    
Predicted Functional Partners:
Tery_0090
PFAM: protein of unknown function DUF323; KEGG: son:SO4465 hypothetical protein.
  
     0.532
Tery_0085
PFAM: sulfotransferase; KEGG: cel:Y113G7A.11 Hypothetical protein Y113G7A.11.
  
     0.525
Tery_2575
PFAM: protein of unknown function DUF1486; KEGG: ava:Ava_2708 pathogenesis related protein-like.
  
     0.504
Tery_2153
KEGG: ath:At3g25805 expressed protein.
  
     0.469
Tery_3898
PFAM: fatty acid desaturase; KEGG: ana:all1598 phosphatidylcholine desaturase.
  
     0.469
Tery_0289
Transposase; KEGG: ana:all4868 transposase.
       0.413
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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