STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0331PFAM: ABC transporter related; SMART: ATPase; KEGG: dar:Daro_0045 ABC transporter related. (534 aa)    
Predicted Functional Partners:
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.726
Tery_3819
PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like Methyltransferase type 11 Methyltransferase type 12; KEGG: ana:alr2680 polyketide synthase.
  
   
 0.492
Tery_2214
PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: mst:Msp_1550 predicted ATP-dependent 26S proteasome regulatory subunit.
  
  
 0.462
Tery_4713
PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: ava:Ava_1248 AAA ATPase, central region.
  
  
 0.430
Tery_2337
KEGG: ava:Ava_0068 AAA ATPase, central region; PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; Belongs to the AAA ATPase family.
  
  
 0.428
Tery_3446
TIGRFAM: putative delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase Proline dehydrogenase; KEGG: ana:alr0540 1-pyrroline-5 carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.420
Tery_1926
PFAM: aldehyde dehydrogenase; KEGG: ava:Ava_3534 aldehyde dehydrogenase.
     
 0.418
Tery_2599
PFAM: aldehyde dehydrogenase; KEGG: xtr:448267 MGC89020 protein; Belongs to the aldehyde dehydrogenase family.
     
 0.418
Tery_2652
PFAM: aldehyde dehydrogenase; KEGG: ava:Ava_3615 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.418
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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