STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0335PFAM: Haem oxygenase; KEGG: ava:Ava_3767 heme oxygenase. (239 aa)    
Predicted Functional Partners:
pcyA
Ferredoxin-dependent bilin reductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.
 
  
 0.947
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.932
Tery_0913
PFAM: oxidoreductase-like; KEGG: ava:Ava_0755 homoserine dehydrogenase, NAD-binding.
  
  
 0.930
Tery_5051
PFAM: ferredoxin-dependent bilin reductase; KEGG: gvi:glr1260 15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Belongs to the HY2 family.
    
 0.922
Tery_0602
PFAM: ferrochelatase; KEGG: ava:Ava_2754 ferrochelatase; Belongs to the ferrochelatase family.
     
 0.914
Tery_2787
PFAM: Ferritin and Dps; KEGG: ava:Ava_1762 ferritin and Dps.
     
 0.901
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
     
 0.900
Tery_3130
Glycine amidinotransferase; KEGG: bja:blr2071 similar to inosamine-phosphate amidinotransferase.
  
     0.682
Tery_4698
Aspartoacylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ana:alr3912 aspartoacylase; Belongs to the AspA/AstE family. Aspartoacylase subfamily.
  
     0.673
Tery_4936
PFAM: Protein-arginine deiminase-like; KEGG: cfa:606921 similar to Protein-arginine deiminase type IV (Peptidylarginine deiminase IV) (HL-60 PAD).
  
     0.615
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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