STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0346KEGG: mag:amb1949 phenolpthiocerol synthesis polyketide synthase PpsA. (79 aa)    
Predicted Functional Partners:
Tery_2968
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase Thioesterase condensation domain phosphopantetheine-binding; KEGG: ava:Ava_3855 amino acid adenylation.
 
 
 0.917
Tery_2109
PFAM: AMP-dependent synthetase and ligase Thioesterase phosphopantetheine-binding; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
 
 0.910
Tery_4684
TIGRFAM: Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: ava:Ava_2597 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
   
 0.832
Tery_1343
PFAM: Thioesterase; KEGG: ava:Ava_4730 thioesterase.
 
  
 0.771
Tery_3181
PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
 
 0.646
Tery_1972
PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
 
 0.618
Tery_3819
PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like Methyltransferase type 11 Methyltransferase type 12; KEGG: ana:alr2680 polyketide synthase.
 
 
0.607
Tery_4064
Thioesterase superfamily; Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA), a reaction involved in phylloquinone (vitamin K1) biosynthesis; Belongs to the 4-hydroxybenzoyl-CoA thioesterase family. DHNA-CoA hydrolase subfamily.
   
 
 0.493
Tery_4502
TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: ana:alr4079 hypothetical protein.
   
 
 0.493
Tery_1437
PFAM: fatty acid desaturase; KEGG: ana:all1599 delta-9 desaturase.
   
 
 0.481
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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