STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pheAPFAM: prephenate dehydratase amino acid-binding ACT; KEGG: ava:Ava_1284 prephenate dehydratase. (296 aa)    
Predicted Functional Partners:
Tery_0293
PFAM: aminotransferase, class I and II; KEGG: ava:Ava_2127 aspartate aminotransferase.
 
 
 0.989
Tery_2701
Arogenate dehydrogenase (NADP); PFAM: Prephenate dehydrogenase; KEGG: ava:Ava_4397 prephenate dehydrogenase.
 
 0.965
hisC
PFAM: aminotransferase, class I and II; KEGG: ava:Ava_2242 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
 
 0.930
Tery_2493
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.
    
 0.925
Tery_0171
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: ava:Ava_4649 3-deoxy-7-phosphoheptulonate synthase.
 
  
 0.920
Tery_4537
KEGG: ava:Ava_0861 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA.
 
  
 0.920
Tery_3525
PFAM: aminotransferase, class I and II; KEGG: ade:Adeh_2315 aminotransferase, class I and II.
 
 
 0.904
Tery_0688
KEGG: ava:Ava_0949 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK.
      0.870
Tery_2717
PFAM: aminotransferase, class I and II; KEGG: mta:Moth_1955 aminotransferase, class I and II.
 
  
 0.820
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
   
 0.816
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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