STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0636KEGG: ava:Ava_B0313 hypothetical protein. (759 aa)    
Predicted Functional Partners:
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 0.831
Tery_3762
Conserved hypothetical protein; KEGG: ana:alr4922 unknown protein.
 
     0.775
Tery_2151
KEGG: ava:Ava_2201 hypothetical protein.
 
    0.767
Tery_1931
Conserved hypothetical protein; KEGG: ana:alr4919 unknown protein.
 
    0.761
Tery_1932
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ava:Ava_2209 hypothetical protein.
 
     0.757
Tery_1942
PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: ava:Ava_2199 type III restriction enzyme, res subunit.
  
   0.755
Tery_2148
Conserved hypothetical protein; KEGG: ana:alr4914 unknown protein.
  
     0.721
Tery_3392
KEGG: ava:Ava_3212 hypothetical protein.
  
 
   0.682
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
    
  0.625
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
  0.623
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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