STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypAHydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (114 aa)    
Predicted Functional Partners:
Tery_0802
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: ana:alr0700 hydrogenase expression/formation protein.
 
 
 0.936
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.923
Tery_0797
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein AIR synthase related protein-like; KEGG: ana:alr0698 hydrogenase expression/formation protein.
 
  
 0.907
Tery_3368
Hydrogen:quinone oxidoreductase; PFAM: nickel-dependent hydrogenase, large subunit; KEGG: ava:Ava_4595 nickel-dependent hydrogenase, large subunit.
 
 
 0.906
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
     
 0.817
Tery_0794
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: ana:asr0695 hydrogenase expression/formation protein.
 
  
 0.816
Tery_0795
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: ava:Ava_4604 hydrogenase formation HypD protein.
 
  
 0.811
Tery_0792
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase SUA5/yciO/yrdC-like zinc finger, HypF; KEGG: ava:Ava_4602 hydrogenase maturation protein HypF.
 
   
 0.808
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
     
 0.764
Tery_1802
Tocopherol cyclase; KEGG: ava:Ava_2735 hypothetical protein.
      
 0.746
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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