STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaXDNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (695 aa)    
Predicted Functional Partners:
Tery_1565
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: ava:Ava_1963 DNA polymerase III subunit delta.
 
 
0.999
Tery_0008
PFAM: DNA polymerase III, beta chain; KEGG: ava:Ava_0002 DNA polymerase III subunit beta.
   
 0.998
Tery_0212
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: ava:Ava_3469 hypothetical protein.
 
 
 0.998
Tery_1889
KEGG: syn:slr0603 DNA polymerase III alpha subunit [Contains: Ssp dnaE intein]; TIGRFAM: DNA polymerase III, alpha subunit Protein splicing (intein) site; PFAM: PHP-like; SMART: Phosphoesterase PHP-like Hedgehog/intein hint domain-like Hedgehog/intein hint-like.
  
 0.989
Tery_1905
KEGG: ava:Ava_3748 DNA polymerase III subunit alpha; TIGRFAM: Protein splicing (intein) site; PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type.
  
 0.986
Tery_1149
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: syn:slr0925 single-stranded DNA-binding protein.
    
 
 0.864
Tery_3185
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ava:Ava_2046 single-strand binding protein.
    
 
 0.864
Tery_1462
KEGG: cya:CYA_1550 replicative DNA helicase; TIGRFAM: Protein splicing (intein) site; PFAM: DnaB-like helicase-like; SMART: Hedgehog/intein hint domain-like Hedgehog/intein hint-like.
   
 
 0.829
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 0.776
Tery_4027
Conserved hypothetical protein 103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
  
 0.655
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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