STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_0894Chromosome segregation ATPase-like protein; KEGG: ana:alr7298 unknown protein. (666 aa)    
Predicted Functional Partners:
Tery_0904
PFAM: ABC transporter, transmembrane region ABC transporter related peptidase C39, bacteriocin processing; SMART: ATPase; KEGG: ava:Ava_1129 ABC transporter, transmembrane region.
 
     0.779
Tery_2359
KEGG: plt:Plut_0878 hypothetical protein.
  
     0.695
Tery_1145
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.548
Tery_1475
KEGG: ava:Ava_0450 cupin region.
  
     0.532
Tery_2632
KEGG: ava:Ava_4476 predicted signal transduction protein containing NACHT domain.
 
  
 0.531
Tery_2946
TIGRFAM: methyltransferase FkbM family; KEGG: cme:CMI076C hypothetical protein Pfam: Glyco_transf_11.
  
     0.530
Tery_2355
TIGRFAM: uncharacterized domain; PFAM: protein of unknown function DUF181; KEGG: plt:Plut_0880 protein of unknown function DUF181.
  
     0.514
Tery_0893
PFAM: Heat shock protein 70; KEGG: ava:Ava_0572 heat shock protein HSP70.
  
   0.505
Tery_4985
Putative signal transduction protein with Nacht domain; KEGG: ana:all0872 unknown protein.
  
     0.501
Tery_2496
KEGG: ava:Ava_4476 predicted signal transduction protein containing NACHT domain.
  
     0.499
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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