STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1151TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: cyb:CYB_2493 rod shape-determining protein. (251 aa)    
Predicted Functional Partners:
Tery_1150
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: ana:all0087 rod shape-determining protein.
 
 
 0.988
Tery_1152
KEGG: ava:Ava_1459 hypothetical protein.
 
 
 0.981
Tery_3016
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: cyb:CYB_0895 penicillin-binding protein.
 
 
 0.907
Tery_2090
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: gvi:gll3425 penicillin-binding protein.
 
 
 0.905
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
  
 0.870
rodA
Cell cycle protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.851
Tery_2667
PFAM: DNA repair protein RadC; KEGG: ana:alr2351 DNA repair protein; Belongs to the UPF0758 family.
  
  
 0.786
Tery_3383
TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ava:Ava_3478 septum site-determining protein MinD.
  
    0.748
Tery_1840
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: ava:Ava_4620 penicillin-binding protein, transpeptidase.
 
 
 0.682
Tery_4942
PFAM: cell cycle protein; KEGG: ava:Ava_1521 cell cycle protein; Belongs to the SEDS family.
 
  
 0.610
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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