STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1351Chromosome segregation ATPase-like protein; KEGG: syn:sll1181 HlyD family secretion protein. (726 aa)    
Predicted Functional Partners:
Tery_1352
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; KEGG: ana:all7315 ABC transporter ATP-binding protein, hemolysin secretion protein; TIGRFAM: type I secretion system ATPase; PFAM: cyclic nucleotide-binding ABC transporter, transmembrane region ABC transporter related peptidase C39, bacteriocin processing; SMART: ATPase.
 
 
 0.885
Tery_3753
Methyltransferase type 11; PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1 Cyclopropane-fatty-acyl-phospholipid synthase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: ava:Ava_2388 glycosyl transferase, family 2.
 
 
 0.806
Tery_0481
TPR repeat; PFAM: glycosyl transferase, group 1 TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: RNA-processing protein, HAT helix Tetratricopeptide region; KEGG: cch:Cag_0301 TPR repeat.
 
 
 0.799
Tery_1360
PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1; KEGG: efa:EF2180 glycosyl transferase, group 2 family protein.
 
 
 0.790
Tery_2257
Hypothetical protein; KEGG: fnu:FN1584 beta-lactamase.
  
   
 0.777
Tery_1353
KEGG: ana:all1363 hypothetical protein.
 
 
   0.771
Tery_2459
SMART: Clostridial hydrophobic; KEGG: cac:CAC2290 extracellular neutral metalloprotease, NprE, fused to ChW-repeats.
 
   
 0.760
Tery_1341
KEGG: mlo:mlr7554 hypothetical protein.
  
     0.754
Tery_3509
KEGG: sha:SH2426 hypothetical protein.
  
    0.733
Tery_3945
PFAM: GUN4-like; KEGG: ana:alr4949 serine/threonine kinase.
  
     0.732
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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