STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1427KEGG: sco:SCO2602 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Tery_1426
Nucleoside phosphorylase-like; KEGG: mac:MA3560 phosphorylase.
      0.747
Tery_1428
PFAM: Miro-like; KEGG: mba:Mbar_A3344 hypothetical protein.
       0.693
Tery_1429
Conserved hypothetical protein; KEGG: ana:alr3492 unknown protein.
       0.693
Tery_1425
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 transposase, IS605 OrfB; KEGG: syn:slr2062 putative transposase gene of IS605 family insertion sequence ISY052a.
       0.439
Tery_1430
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: rsp:RSP_2653 ATPase, AAA family.
       0.430
Tery_1431
Hypothetical protein.
       0.415
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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