STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1452KEGG: hch:HCH_05830 ABC-type branched-chain amino acid transport system, periplasmic component. (458 aa)    
Predicted Functional Partners:
Tery_0128
PFAM: inner-membrane translocator; KEGG: syn:slr1201 ABC-type urea transport system permease protein.
  
  
 0.586
Tery_0129
PFAM: inner-membrane translocator; KEGG: ana:all1950 putative branched-chain amino acid transport system permease protein.
  
  
 0.499
Tery_1451
PFAM: pentapeptide repeat periplasmic binding protein/LacI transcriptional regulator; KEGG: mba:Mbar_A0710 hypothetical protein.
 
     0.462
Tery_4447
Multi-sensor hybrid histidine kinase; KEGG: ana:all2875 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein response regulator receiveR GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif.
  
 
 0.452
Tery_1465
Putative signal transduction protein with Nacht domain; KEGG: ana:all3465 unknown protein.
  
     0.403
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.