STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1557Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: ana:alr0295 transcriptional regulator. (234 aa)    
Predicted Functional Partners:
Tery_2905
PFAM: cyclic nucleotide-binding; KEGG: ava:Ava_3692 cyclic nucleotide-binding domain (cNMP-BD) protein.
  
  
 
0.924
Tery_1037
PFAM: cyclic nucleotide-binding; KEGG: ava:Ava_0144 cyclic nucleotide-binding domain (cNMP-BD) protein.
  
  
 
0.914
Tery_3155
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase response regulator receiveR GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ana:all4963 adenylate cyclase carring two-component hybrid sensor and regulator domains.
  
 0.711
Tery_1556
KEGG: ava:Ava_3065 hypothetical protein.
       0.703
Tery_4447
Multi-sensor hybrid histidine kinase; KEGG: ana:all2875 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein response regulator receiveR GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif.
  
 
 0.549
Tery_4902
KEGG: ava:Ava_2898 hypothetical protein.
    
 
 0.524
Tery_0647
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase GAF; SMART: PAS; KEGG: ana:all1904 adenylate cyclase.
 
 0.518
Tery_2417
KEGG: ana:all0661 adenylate cyclase; TIGRFAM: PAS sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
  
 0.506
Tery_4980
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:all0219 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiveR PAS fold-3 PAS fold; SMART: PAS.
  
 
 0.475
Tery_1555
TIGRFAM: Protein of unknown function DUF102; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: ava:Ava_3064 hypothetical protein; Belongs to the UPF0284 family.
       0.465
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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